Package: swfscAirDAS 0.3.0

swfscAirDAS: Southwest Fisheries Science Center Aerial DAS Data Processing

Process and summarize aerial survey 'DAS' data (AirDAS) <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-185.PDF> collected using an aerial survey program from the Southwest Fisheries Science Center (SWFSC) <https://www.fisheries.noaa.gov/west-coast/science-data/california-current-marine-mammal-assessment-program>. PDF files detailing the relevant AirDAS data formats are included in this package.

Authors:Sam Woodman [aut, cre]

swfscAirDAS_0.3.0.tar.gz
swfscAirDAS_0.3.0.zip(r-4.5)swfscAirDAS_0.3.0.zip(r-4.4)swfscAirDAS_0.3.0.zip(r-4.3)
swfscAirDAS_0.3.0.tgz(r-4.4-any)swfscAirDAS_0.3.0.tgz(r-4.3-any)
swfscAirDAS_0.3.0.tar.gz(r-4.5-noble)swfscAirDAS_0.3.0.tar.gz(r-4.4-noble)
swfscAirDAS_0.3.0.tgz(r-4.4-emscripten)swfscAirDAS_0.3.0.tgz(r-4.3-emscripten)
swfscAirDAS.pdf |swfscAirDAS.html✨
swfscAirDAS/json (API)
NEWS

# Install 'swfscAirDAS' in R:

install.packages('swfscAirDAS', repos = c('https://smwoodman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/smwoodman/swfscairdas/issues

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

On CRAN:

15 exports 0.62 score 87 dependencies 7 scripts 159 downloads

Last updated 1 years agofrom:8fd967beca. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 09 2024
R-4.5-win	OK	Sep 09 2024
R-4.5-linux	OK	Sep 09 2024
R-4.4-win	OK	Sep 09 2024
R-4.4-mac	OK	Sep 09 2024
R-4.3-win	OK	Sep 09 2024
R-4.3-mac	OK	Sep 09 2024

Exports:airdas_check airdas_chop_condition airdas_chop_equallength airdas_chop_section airdas_comments airdas_comments_process airdas_effort airdas_effort_sight airdas_format_pdf airdas_process airdas_read airdas_segdata airdas_sight as_airdas_df as_airdas_dfr

Dependencies:abind bit bit64 class classInt cli clipr clue cluster coda colorspace cpp11 crayon DBI deldir dplyr e1071 fansi farver fBasics generics ggplot2 ggrepel glue gss gtable HDInterval hms igraph isoband KernSmooth kknn labeling lattice lifecycle lubridate magrittr MASS Matrix mgcv modeest munsell nlme pillar pkgconfig polyclip prettyunits progress proxy purrr R6 RColorBrewer Rcpp readr rlang rmutil rpart runjags s2 scales sf spatial spatstat.data spatstat.geom spatstat.univar spatstat.utils stable stabledist statip stringi stringr swfscDAS swfscMisc tibble tidyr tidyselect timechange timeDate timeSeries tzdb units utf8 vctrs viridisLite vroom withr wk

Introduction to swfscAirDAS

Rendered fromswfscAirDAS.Rmdusingknitr::rmarkdownon Sep 09 2024.

Last update: 2023-06-09
Started: 2020-05-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Southwest Fisheries Science Center Aerial Survey DAS	swfscAirDAS-package swfscAirDAS
Check AirDAS file	airdas_check
Chop AirDAS data - condition	airdas_chop_condition airdas_chop_condition.airdas_df airdas_chop_condition.data.frame
Chop AirDAS data - equal length	airdas_chop_equallength airdas_chop_equallength.airdas_df airdas_chop_equallength.data.frame
Chop AirDAS data - section	airdas_chop_section airdas_chop_section.airdas_df airdas_chop_section.data.frame
Extract comments from AirDAS data	airdas_comments airdas_comments.airdas_df airdas_comments.airdas_dfr airdas_comments.data.frame
Process comments in AirDAS data	airdas_comments_process airdas_comments_process.airdas_df airdas_comments_process.airdas_dfr airdas_comments_process.data.frame
'airdas_df' class	airdas_df airdas_df-class
'airdas_dfr' class	airdas_dfr airdas_dfr-class
Summarize AirDAS effort	airdas_effort airdas_effort.airdas_df airdas_effort.data.frame
Summarize AirDAS sightings by effort segment	airdas_effort_sight
Aerial DAS format requirements	airdas_format_pdf
Process aerial survey DAS data	airdas_process airdas_process.airdas_dfr airdas_process.character airdas_process.data.frame
Read AirDAS file(s)	airdas_read
Summarize AirDAS data for a continuous effort section	airdas_segdata airdas_segdata.airdas_df airdas_segdata.data.frame
Aerial DAS sightings	airdas_sight airdas_sight.airdas_df airdas_sight.data.frame
Coerce object to a airdas_df object	as_airdas_df as_airdas_df.airdas_df as_airdas_df.data.frame
Coerce object to a airdas_dfr object	as_airdas_dfr as_airdas_dfr.airdas_dfr as_airdas_dfr.data.frame
Subsetting objects created using swfscAirDAS	$<-.airdas_df $<-.airdas_dfr subsetting [.airdas_df [.airdas_dfr [<-.airdas_df [<-.airdas_dfr [[<-.airdas_df [[<-.airdas_dfr